Mtrevisan at 14:18, 19 February 2018

2018-02-19T14:18:04Z

Mtrevisan: Created page with "Anselmo v0.04 is a program made in the Jesus Vazquez Cardiovascular Proteomics Lab at Centro Nacional de Investigaciones Cardiovasculares, used to identify the integration whi..."

2017-10-03T14:34:21Z

Created page with "Anselmo v0.04 is a program made in the Jesus Vazquez Cardiovascular Proteomics Lab at Centro Nacional de Investigaciones Cardiovasculares, used to identify the integration whi..."

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Anselmo v0.04 is a program made in the Jesus Vazquez Cardiovascular Proteomics Lab at Centro Nacional de Investigaciones Cardiovasculares, used to identify the integration which holds the median variance from a set of randomised SanXoT integrations (i.e., integrations performed using SanXoT's parametre -R).

Anselmo needs at least:

:1) the prefix (by using the -f argument) of the set of experiments, i.e. when the info files of the randomisations are such as:

heartExperiment1_infoFile.txt
heartExperiment2_infoFile.txt
...
heartExperimentZ_infoFile.txt

:the prefix is considered to be "heartExperiment".

:2) the folder where all those info files are (they must be in the same folder), using the -p argument.

After reading the variances in the set of info files, Anselmo identifies the info file containing the median of the set of variances, and then it renames the files using its prefix, i.e. using the previous example, and assuming the median of the variance is in experiment labelled "9", then it copies the files

heartExperiment9_infoFile.txt
heartExperiment9_higherLevel.txt
heartExperiment9_outStats.txt
...

into

med_heartExperiment_infoFile.txt
med_heartExperiment_higherLevel.txt
med_heartExperiment_outStats.txt
...

Usage:
anselmo.py -p[folder] -fyeast_nullHypothesis [OPTIONS]

Arguments:

-h, --help Display this help and exit.
-a, --analysis=string
Use a prefix for the output files (for the current
version, this only affects the log file).
-f, --prefix=string Prefix used for the integration of the N randomised
experiments.
-g, --extraprefix=string
Additional copy for another set of files produced by
an integration, using the same tag as the median
calculated via -f.
-L, --logfile=filename
To use a non-default name for the log file.
-m, --mediantag=string
To use a non-default tag for the copied files, which
will be used as prefix (default is "med").
-p, --place, --folder=foldername
To use a different common folder for the output files.
If this is not provided, the folder used will be the
same as the input folder.

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Anselmo - Revision history

Mtrevisan at 14:18, 19 February 2018

Mtrevisan: Created page with "Anselmo v0.04 is a program made in the Jesus Vazquez Cardiovascular Proteomics Lab at Centro Nacional de Investigaciones Cardiovasculares, used to identify the integration whi..."