http://wikis.cnic.es/proteomica/index.php?action=history&feed=atom&title=MaesePedroMaesePedro - Revision history2026-04-09T15:25:12ZRevision history for this page on the wikiMediaWiki 1.30.1http://wikis.cnic.es/proteomica/index.php?title=MaesePedro&diff=494&oldid=prevMtrevisan at 14:18, 19 February 20182018-02-19T14:18:42Z<p></p>
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<td colspan="2" style="background-color: white; color:black; text-align: center;">Revision as of 14:18, 19 February 2018</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>                       peptides such as ASSAK, EGTGER (when using trypsin).</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>                       peptides such as ASSAK, EGTGER (when using trypsin).</div></td></tr>
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</table>Mtrevisanhttp://wikis.cnic.es/proteomica/index.php?title=MaesePedro&diff=439&oldid=prevMtrevisan: Created page with "MaesePedro v0.03 is a program made in the Jesus Vazquez Cardiovascular Proteomics Lab at Centro Nacional de Investigaciones Cardiovasculares, used to generate pseudoinverted F..."2017-10-03T14:36:48Z<p>Created page with "MaesePedro v0.03 is a program made in the Jesus Vazquez Cardiovascular Proteomics Lab at Centro Nacional de Investigaciones Cardiovasculares, used to generate pseudoinverted F..."</p>
<p><b>New page</b></p><div>MaesePedro v0.03 is a program made in the Jesus Vazquez Cardiovascular Proteomics Lab at Centro Nacional de Investigaciones Cardiovasculares, used to generate pseudoinverted FASTA files.<br />
<br />
Sanson needs one input file:<br />
<br />
:* a FASTA file (using the -f command)<br />
<br />
And delivers two output files:<br />
<br />
:* the inverted FASTA file<br />
:* a log file (default suffix: "_logFile")<br />
<br />
Usage:<br />
maesepedro.py -f[FASTAFile]<br />
<br />
Arguments:<br />
<br />
-h, --help Display this help and exit.<br />
-a, --analysis=string<br />
Use a prefix for the output files.<br />
-p, --place, --folder=foldername<br />
To use a different common folder for the output files.<br />
If this is not provided, the the folder used will be the<br />
same as the FASTA file folder.<br />
-c, --cleavesites=string<br />
The residues after which the protease is cleaving.<br />
Default is trypsin (KR). Note that only C-terminal<br />
cleaving proteases are being considered in this version.<br />
-f, --fastafile=string<br />
The input FASTA file to invert.<br />
-r, --removepalindromes<br />
Remove peptides unchanged upon pseudoinversion, i.e.,<br />
peptides such as ASSAK, EGTGER (when using trypsin).<br />
Palindromic peptides are not removed by default.</div>Mtrevisan