QuiXML - Revision history

Mtrevisan at 09:15, 26 May 2017

2017-05-26T09:15:02Z

Mtrevisan at 13:46, 26 April 2017

2017-04-26T13:46:14Z

Mtrevisan: Created page with "The '''QuiXML''' is the central file of '''QuiXoT'''. It is a relatively simple text file with XML format, and defines the information presented in DataGrid information..."

2017-04-24T10:41:35Z

Created page with "The '''QuiXML''' is the central file of '''QuiXoT'''. It is a relatively simple text file with XML format, and defines the information presented in DataGrid information..."

New page

The '''QuiXML''' is the central file of '''[[QuiXoT]]'''. It is a relatively simple text file with XML format, and defines the information presented in [[DataGrid information in QuiXoT|QuiXoT's DataGrid]].

This file includes at least the peptide-spectrum matches (the identifications) for all the analysed spectra. Additionally, it can contain quantitative information, as well as statistical data, depending on the stage of the analysis.

A QuiXML file can be generated in two ways:
#Performing a [[pRatio]] analysis, using as input files the Proteome Discoverer files for the direct and inverse searches (also SRF files are allowed, but their use is not maintained).
#Importing data from a tab-separated text file (which can be generated by an external program), using the [[CSVToQuiXML]] program.

It is important to note that, in order to manage spectral information (such as graphically represent spectral data, or performing the quantification analysis), the QuiXML must be accompanied at all times by the binStack folder containing those spectra. However, for the use of statistical data (such as for performing the statistical analysis, or to represent statistical information), the binStack folder is not needed; this is especially important from a technical viewpoint, as spectral information tends to occupy a great amount of memory (so, for example, when sharing files over the internet, in most cases only the QuiXML is needed).

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 #Importing data from a tab-separated text file (which can be generated by an external program), using the [[CSVToQuiXML]] program.
-It is important to note that, in order to manage spectral information (such as graphically represent spectral data, or performing the quantification analysis), the QuiXML must be accompanied at all times by the binStack folder containing those spectra. However, for the use of statistical data (such as for performing the statistical analysis, or to represent statistical information), the binStack folder is not needed; this is especially important from a technical viewpoint, as spectral information tends to occupy a great amount of memory (so, for example, when sharing files over the internet, in most cases only the QuiXML is needed).
+It is important to note that, in order to manage spectral information (such as graphically represent spectral data, or performing the quantification analysis), the QuiXML must be accompanied at all times by the '''binStack folder''' containing those spectra. However, for the use of statistical data (such as for performing the statistical analysis, or to represent statistical information), the binStack folder is not needed; this is especially important from a technical viewpoint, as spectral information tends to occupy a great amount of memory (so, for example, when sharing files over the internet, in most cases only the QuiXML is needed).
 [[Category:QuiXoT]]

← Older revision		Revision as of 13:46, 26 April 2017
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	It is important to note that, in order to manage spectral information (such as graphically represent spectral data, or performing the quantification analysis), the QuiXML must be accompanied at all times by the binStack folder containing those spectra. However, for the use of statistical data (such as for performing the statistical analysis, or to represent statistical information), the binStack folder is not needed; this is especially important from a technical viewpoint, as spectral information tends to occupy a great amount of memory (so, for example, when sharing files over the internet, in most cases only the QuiXML is needed).		It is important to note that, in order to manage spectral information (such as graphically represent spectral data, or performing the quantification analysis), the QuiXML must be accompanied at all times by the binStack folder containing those spectra. However, for the use of statistical data (such as for performing the statistical analysis, or to represent statistical information), the binStack folder is not needed; this is especially important from a technical viewpoint, as spectral information tends to occupy a great amount of memory (so, for example, when sharing files over the internet, in most cases only the QuiXML is needed).
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		+	[[Category:QuiXoT]]