QuiXoT software package - Revision history

Mtrevisan at 10:49, 26 May 2017

2017-05-26T10:49:52Z

2017-05-24T10:48:41Z

2017-05-24T10:37:22Z

2017-05-24T10:35:54Z

2017-05-24T08:53:08Z

2017-05-16T10:39:59Z

2017-04-28T10:49:14Z

2017-04-26T13:44:54Z

2017-04-26T13:34:23Z

2017-04-26T13:29:27Z

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 === Who is behind QuiXoT? ===
-QuiXoT has been developed originally by '''[[User:Pnavarro|Pedro Navarro]]''' and afterwards by '''[[User:Mtrevisan|Marco Trevisan-Herraz]]''', at the Cardiovascular Proteomics Lab of Prof. Jesús Vázquez, within the Centro Nacional de Investigaciones Cardiovasculares (CNIC), in Madrid, Spain (originally at the Protein Chemistry and Proteomics Lab, in the Centro de Biología Molecular Severo Ochoa, CBM-CSIC).
+QuiXoT has been developed originally by '''Pedro Navarro''' and afterwards by '''[[User:Mtrevisan|Marco Trevisan-Herraz]]''', at the Cardiovascular Proteomics Lab of Prof. Jesús Vázquez, within the Centro Nacional de Investigaciones Cardiovasculares (CNIC), in Madrid, Spain (originally at the Protein Chemistry and Proteomics Lab, in the Centro de Biología Molecular Severo Ochoa, CBM-CSIC).
 The [[:Image:QuiXoT logo.png|QuiXoT logo]] has been designed by José Pérez Pérez and Pedro Navarro.

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 === Try QuiXoT! ===
-You can download the executables of the different programs from their corresponding article. The source code will be available soon.
+You can download the executables of the different programs from their corresponding article. The source code is available at [https://github.com/CNIC-Proteomics the Lab's site at GitHub].
 You can start checking the '''[[unit tests for QuiXoT|unit tests]]''' to check the programs run as expected, as well as to get familiarised with the software.

@@ Line 25: / Line 25: @@
 === Who is behind QuiXoT? ===
-QuiXoT has been developed originally by '''[[User:pnavarro|Pedro Navarro]]''' and afterwards by '''[[User:Mtrevisan|Marco Trevisan-Herraz]]''', at the Cardiovascular Proteomics Lab of Prof. Jesús Vázquez, within the Centro Nacional de Investigaciones Cardiovasculares (CNIC), in Madrid, Spain (originally at the Protein Chemistry and Proteomics Lab, in the Centro de Biología Molecular Severo Ochoa, CBM-CSIC).
+QuiXoT has been developed originally by '''[[User:Pnavarro|Pedro Navarro]]''' and afterwards by '''[[User:Mtrevisan|Marco Trevisan-Herraz]]''', at the Cardiovascular Proteomics Lab of Prof. Jesús Vázquez, within the Centro Nacional de Investigaciones Cardiovasculares (CNIC), in Madrid, Spain (originally at the Protein Chemistry and Proteomics Lab, in the Centro de Biología Molecular Severo Ochoa, CBM-CSIC).
 The [[:Image:QuiXoT logo.png|QuiXoT logo]] has been designed by José Pérez Pérez and Pedro Navarro.

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 :* '''[[QuiXoT]]''', the main program of the package, and the namesake of the whole package,
 :* '''[[QuiXtoQuiX]]''', to analyse protein quantifications performed in the MS1-spectra,
-:* '''[[MascotToQuiXML]]''', to convert Mascot's DAT files into QuiXML files (no longer updated),
+:* '''[[MascotToQuiXML]]''' (no longer updated), to convert Mascot's DAT files into QuiXML files,
-:* '''[[mgfToBinStack]]''', to import spectral data from Mascot's MGF files to '''[[binStack]]''' (no longer updated),
+:* '''[[mgfToBinStack]]''' (no longer updated), to import spectral data from Mascot's MGF files to '''[[binStack]]''',
 :* '''[[XMLTool]]''', a lightweight, multi-purpose program to operate with large QuiXML files, or other XML file.

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 === Why QuiXoT? ===
-The tools available to the scientific community to quantitate and make statistical analyses in ''large scale'' quantitative proteomic experiments were very limited. For this reason we started developing QuiXoT in our laboratory.
+The tools available to the scientific community to quantify and make statistical analyses in ''large scale'' quantitative proteomic experiments were very limited. For this reason we started developing QuiXoT in our laboratory.
-In 2006 we started developing a tool for 18O isotope-labeling experiments able to automatically extract well assigned spectra, quantitate the data and make a fast statistical analysis. Everything within one hour.
+In 2006 we started developing a tool for 18O isotope-labeling experiments able to automatically extract well assigned spectra, quantify the data and make a fast statistical analysis. Everything within one hour.
 Later, in February 2009, we decided to expand the software in order to analyze any type of isotopic labeling and to accept data from the most common mass-spectrometres.

← Older revision		Revision as of 10:39, 16 May 2017
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	After that, you can start '''[[exploring QuiXoT features]]''', or you can start using your own data (note that depending on your analysis, you may need to change the configuration files).		After that, you can start '''[[exploring QuiXoT features]]''', or you can start using your own data (note that depending on your analysis, you may need to change the configuration files).
		+
		+	=== Licence ===
		+
		+	You can check at '''[[PROTEOMICA:Copyrights]]''' the licence under which all the programs presented here are available.

← Older revision		Revision as of 10:49, 28 April 2017
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	You can download the executables of the different programs from their corresponding article. The source code will be available soon.		You can download the executables of the different programs from their corresponding article. The source code will be available soon.

−	You can start checking the '''[[unit tests for QuiXoT\|unit tests]]''', or start using your own data (note that depending on your analysis, you may need to change the configuration files).	+	You can start checking the '''[[unit tests for QuiXoT\|unit tests]]''' to check the programs run as expected, as well as to get familiarised with the software.
		+
		+	After that, you can start '''[[exploring QuiXoT features]]''', or you can start using your own data (note that depending on your analysis, you may need to change the configuration files).

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 === What is QuiXoT? ===
-'''QuiXoT''' is a bioinformatic software package developed especially to provide a set of tools for quantitative proteomics.
+The '''QuiXoT software package''' is a bioinformatic software package developed especially to provide a set of tools for quantitative proteomics.
 The different programs included in the package are: