Anselmo

Anselmo v0.04 is a program made in the Jesus Vazquez Cardiovascular Proteomics Lab at Centro Nacional de Investigaciones Cardiovasculares, used to identify the integration which holds the median variance from a set of randomised SanXoT integrations (i.e., integrations performed using SanXoT's parametre -R).

Anselmo needs at least:

1) the prefix (by using the -f argument) of the set of experiments, i.e. when the info files of the randomisations are such as:

   heartExperiment1_infoFile.txt
   heartExperiment2_infoFile.txt
   ...
   heartExperimentZ_infoFile.txt

the prefix is considered to be "heartExperiment".

2) the folder where all those info files are (they must be in the same folder), using the -p argument.

After reading the variances in the set of info files, Anselmo identifies the info file containing the median of the set of variances, and then it renames the files using its prefix, i.e. using the previous example, and assuming the median of the variance is in experiment labelled "9", then it copies the files

   heartExperiment9_infoFile.txt
   heartExperiment9_higherLevel.txt
   heartExperiment9_outStats.txt
   ...

into

   med_heartExperiment_infoFile.txt
   med_heartExperiment_higherLevel.txt
   med_heartExperiment_outStats.txt
   ...
    

Usage:

anselmo.py -p[folder] -fyeast_nullHypothesis [OPTIONS]

Arguments:

  -h, --help          Display this help and exit.
  -a, --analysis=string
                      Use a prefix for the output files (for the current
                      version, this only affects the log file).
  -f, --prefix=string Prefix used for the integration of the N randomised
                      experiments.
  -g, --extraprefix=string
                      Additional copy for another set of files produced by
                      an integration, using the same tag as the median
                      calculated via -f.
  -L, --logfile=filename
                      To use a non-default name for the log file.
  -m, --mediantag=string
                      To use a non-default tag for the copied files, which
                      will be used as prefix (default is "med").
  -p, --place, --folder=foldername
                      To use a different common folder for the output files.
                      If this is not provided, the folder used will be the
                      same as the input folder.