Selected publications

    Vicanolo T, Özcan A, Li JL, Huerta-López C, Ballesteros I, Rubio-Ponce A, Dumitru AC, Nicolás-Ávila JÁ, Molina-Moreno M, Reyes-Gutierrez P, Johnston AD, Martone C, Greto E, Quílez-Alvarez A, Calvo E, Bonzon-Kulichenko E, Álvarez-Velez R, Chooi MY, Kwok I, González-Bermúdez B, Malleret B, Espinosa FM, Zhang M, Wang YL, Sun D, Zhen Chong S, El-Armouche A, Kim KK, Udalova IA, Greco V, Garcia R, Vázquez J, Dopazo A, Plaza GR, Alegre-Cebollada J, Uderhardt S, Ng LG, Hidalgo A. Matrix-producing neutrophils populate and shield the skin. Nature (2025) 641:740-748
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    Mastrangelo A, Robles-Vera I, Mañanes D, Galán M, Femenía-Muiña M, Redondo-Urzainqui A, Barrero-Rodríguez R, Papaioannou E, Amores-Iniesta J, Devesa A, Lobo-González M, Carreras A, Beck KR, Ivarsson S, Gummesson A, Georgiopoulos G, Rodrigo-Tapias M, Martínez-Cano S, Fernández-López I, Nuñez V, Ferrarini A, Inohara N, Stamatelopoulos K, Benguría A, Cibrian D, Sánchez-Madrid F, Alonso-Herranz V, Dopazo A, Barbas C, Vázquez J, López JA, González-Martín A, Nuñez G, Stellos K, Bergström G, Bäckhed F, Fuster V, Ibañez B, Sancho D. Imidazole propionate is a driver and therapeutic target in atherosclerosis. Nature (2025) 645:254-261
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    Martinez-Val A, Lozano-Juárez S, Lumbreras Burgueño J, Rodríguez I, Couselo-Seijas M, Simón-Chica A, Galán-Arriola C, Fernández-Jiménez R, Núñez E, Jorge I, Filgueiras-Rama D, Ibáñez B, Vázquez J. Benchmark for Quantitative Global and Redox Proteomics Analysis by Combining Protein-Aggregation Capture and Data Independent Acquisition. ANAL CHEM (2025) 97:19730-19741.
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    Cerro-Pardo I, Núñez E, Picatoste B, Márquez-Gálvez C, Ortega-Villanueva L, Raposo-Gutiérrez I, Lindholt JS, Blanco-Colio LM, Ramiro AR, Vázquez J, Martín-Ventura JL. Immunoglobulin A/PIGR axis as potential mediators of human abdominal aortic aneurysms revealed by topologically resolved proteomics. J TRANSL MED (2025) 23:747
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    Silva-Rojas R, Vicente N, Gavilán-Herrera M, Labrador-Cantarero V, Sicilia J, Giménez-Sáez O, Dumitru AC, Sánchez MI, Gato-Vilaseca M, Velázquez-Carreras D, López JA, Vázquez J, Herrero-Galán E, López-Unzu MA, Pricolo MR, Alegre-Cebollada J. Mechanically knocking out titin reveals protein tension loss as a trigger of muscle disease. Nat Biomed Eng (2025) 9:1758-1774
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    Hernansanz-Agustín P, Morales-Vidal C, Calvo E, Natale P, Martí-Mateos Y, Jaroszewicz SN, Cabrera-Alarcón JL, Acín-Pérez R, López-Montero I, Vázquez J, Enríquez JA. A transmitochondrial sodium gradient controls membrane potential in mammalian mitochondria. Cell (2024) 187:6599-6613
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    Binek A, Castans C, Jorge I, Bagwan N, Rodríguez JM, Fernández-Jiménez R, Galán-Arriola C, Oliver E, Gómez M, Clemente-Moragón A, Ibanez B, Camafeita E, Vázquez J. Oxidative Post-translational Protein Modifications upon Ischemia/Reperfusion Injury Antioxidants (2024) 13:106
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    Laguillo-Gómez A, Calvo E, Martín-Cófreces N, Lozano-Prieto M, Sánchez-Madrid F, Vázquez J. ReCom: A semi-supervised approach to ultra-tolerant database search for improved identification of modified peptides. J Proteomics (2023) 287
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    Rodríguez JM, Jorge I, Martinez-Val A, Barrero-Rodríguez R, Magni R, Núñez E, Laguillo A, Devesa CA, López JA, Camafeita E, Vázquez J. iSanXoT: A standalone application for the integrative analysis of mass spectrometry-based quantitative proteomics data Comput Struct Biotechnol J (2023) 23:452-459
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    Núñez E, Fuster V, Gómez-Serrano M, Valdivielso JM, Fernández-Alvira JM, Martínez-López D, Rodríguez JM, Bonzon-Kulichenko E, Calvo E, Alfayate A, Bermudez-Lopez M, Escola-Gil JC, Fernández-Friera L, Cerro-Pardo I, Mendiguren JM, Sánchez-Cabo F, Sanz J, Ordovás JM, Blanco-Colio LM, García-Ruiz JM, Ibáñez B, Lara-Pezzi E, Fernández-Ortiz A, Martín-Ventura JL, Vázquez J. Unbiased plasma proteomics discovery of biomarkers for improved detection of subclinical atherosclerosis EBioMedicine (2022) 76
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    Lorenzo C, Delgado P, Busse CE, Sanz-Bravo A, Martos-Folgado I, Bonzon-Kulichenko E, Ferrarini A, Gonzalez-Valdes IB, Mur SM, Roldan-Montero R, Martinez-Lopez D, Martin-Ventura JL, Vazquez J, Wardemann H, Ramiro AR ALDH4A1 is an atherosclerosis auto-antigen targeted by protective antibodies Nature (2021) 589:287–292
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    Bosch M, Sánchez-Álvarez M, Fajardo A, Kapetanovic R, Steiner B, Dutra F, Moreira L, López JA, Campo R, Marí M, Morales-Paytuví F, Tort O, Gubern A, Templin RM, Curson JEB, Martel N, Català C, Lozano F, Tebar F, Enrich C, Vázquez J, Del Pozo MA, Sweet MJ, Bozza PT, Gross SP, Parton RG, Pol A Mammalian lipid droplets are innate immune hubs integrating cell metabolism and host defense Science (2020) 370:eaay8085
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    Nicolas-Avila JA, Lechuga-Vieco AV, Esteban-Martinez L, Sanchez-Diaz M, Diaz-Garcia E, Santiago DJ, Rubio-Ponce A, Li JL, Balachander A, Quintana JA, Martinez-de-Mena R, Castejon-Vega B, Pun-Garcia A, Traves PG, Bonzon-Kulichenko E, Garcia-Marques F, Cusso L, N AG, Gonzalez-Guerra A, Roche-Molina M, Martin-Salamanca S, Crainiciuc G, Guzman G, Larrazabal J, Herrero-Galan E, Alegre-Cebollada J, Lemke G, Rothlin CV, Jimenez-Borreguero LJ, Reyes G, Castrillo A, Desco M, Munoz-Canoves P, Ibanez B, Torres M, Ng LG, Priori SG, Bueno H, Vazquez J, Cordero MD, Bernal JA, Enriquez JA, Hidalgo A A Network of Macrophages Supports Mitochondrial Homeostasis in the Heart Cell (2020) 183:94-109
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    Martinez-Lopez D, Roldan-Montero R, Garcia-Marques F, Nunez E, Jorge I, Camafeita E, Minguez P, Rodriguez de Cordoba S, Lopez-Melgar B, Lara-Pezzi E, Fernandez-Ortiz A, Ibanez B, Valdivielso JM, Fuster V, Michel JB, Blanco-Colio LM, Vazquez J*, Martin-Ventura JL* (JV and JLMV are co-corresponding authors) Complement C5 Protein as a Marker of Subclinical Atherosclerosis J Am Coll Cardiol (2020) 75:1926-1941
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    Prieto G, Vazquez J A protein probability model for high-throughput protein identification by mass spectrometry-based proteomics J Proteome Res (2020) 19:1285-1297
    Calvo E, Cogliati S, Hernansanz-Agustín P, Loureiro-López M, Guarás A, Casuso RA, García-Marqués F, Acín-Pérez R, Martí-Mateos Y, Silla-Castro J, Carro-Alvarellos M, Huertas JR, Vázquez J*, Enríquez JA* (JV and JAE are co-corresponding authors) Functional role of respiratory supercomplexes in mice: SCAF1 relevance and segmentation of the Qpool Sci Adv (2020) 6:eaba7509
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    Bonzon-Kulichenko E, Camafeita E, Lopez JA, Gomez-Serrano M, Jorge I, Calvo E, Nunez E, Trevisan-Herraz M, Bagwan N, Barcena JA, Peral B, Vazquez J Improved integrative analysis of the thiol redox proteome using filter-aided sample preparation J Proteomics (2020) 214:103624
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    Martinez-Lopez D, Camafeita E, Cedo L, Roldan-Montero R, Jorge I, Garcia-Marques F, Gomez-Serrano M, Bonzon-Kulichenko E, Blanco-Vaca F, Blanco-Colio LM, Michel JB, Escola-Gil JC, Vazquez J*, Martin-Ventura JL* (JV and JLMV are co-corresponding authors) APOA1 oxidation is associated to dysfunctional high-density lipoproteins in human abdominal aortic aneurysm EBioMedicine (2019) 43:43-53
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    Bagwan N, Bonzon-Kulichenko E, Calvo E, Lechuga-Vieco AV, Michalakopoulos S, Trevisan-Herraz M, Ezkurdia I, Rodriguez JM, Magni R, Latorre-Pellicer A, Enriquez JA, Vazquez J. Comprehensive Quantification of the Modified Proteome Reveals Oxidative Heart Damage in Mitochondrial Heteroplasmy. Cell Rep (2018) 23:3685-97
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    Cogliati S*, Calvo E*, Loureiro M, Guaras AM, Nieto-Arellano R, Garcia-Poyatos C, Ezkurdia I, Mercader N, Vazquez J*, Enriquez JA* (SC and EC contributed equally; JV and JAE are co-corresponding authors) Mechanism of super-assembly of respiratory complexes III and IV. Nature (2016) 539:579-82

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